PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000165845
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 471aa    MW: 53235.3 Da    PI: 4.6468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000165845genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.35.6e-31581981128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                    lp+G++F+Ptd+e++++ L+k+  g++     ++++  i +vd    i+ ++P++Lp +vk + +  +fF+++ k+y+tg+rk+r+++      + 
  MDP0000165845  58 LPKGVKFDPTDQEIMWHLLAKSGVGDQkphpfIDEF--ILTVDddegICCSHPRKLP-NVKLDGSPSHFFHRAIKAYNTGTRKRRKIHdgdgdgDV 150
                    799**************9999966555476543332..433322344**********.667788999******************97644443355 PP

            NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    +W++tg++k+v+  +g + g+kk++v+y  +    k++kt+Wvmh+y+l
  MDP0000165845 151 RWHKTGRTKPVIL-DGVQRGCKKIMVLYmsTVXGGKPVKTNWVMHQYHL 198
                    7************.99************5434667778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3843217IPR003441NAC domain
PROSITE profilePS5100530.05758217IPR003441NAC domain
PfamPF023651.7E-1359198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAGPSWLFDK NRIATKIRSA SGSYDSVGIK WQSNPTKSCP KCQYTMDNSD VAQEWPGLPK  60
GVKFDPTDQE IMWHLLAKSG VGDQKPHPFI DEFILTVDDD EGICCSHPRK LPNVKLDGSP  120
SHFFHRAIKA YNTGTRKRRK IHDGDGDGDV RWHKTGRTKP VILDGVQRGC KKIMVLYMST  180
VXGGKPVKTN WVMHQYHLGI EEDEKDGEYV ISKIYYQQQE AKQADKTDQD VPESIDAVIT  240
KVDPVTPKXA TPEPPRAERK LGDFXLGLDT PAPSRDPXLQ ILIWAYFYGF CIQLKYREED  300
GAEDEVRPDV DSALDEVHPE VNRAEDVRPE SEIPDDYDQH KVENQADEVI NNTENIDHAQ  360
EDPKWWDNES QNLLDSQQLV EGLSLCDELL QSQSPNRGGH ENGEQAHVKP RLADYAKLGP  420
EDLKKDLEAC QNIVLDPANI MDLDTPPDFR LSQLEFGSQE SFLSWGGKVA D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D4e-145822320174NAC domain-containing protein 19
3swp_C4e-145822320174NAC domain-containing protein 19
3swp_B4e-145822320174NAC domain-containing protein 19
3swp_A4e-145822320174NAC domain-containing protein 19
3swm_D4e-145822320174NAC domain-containing protein 19
3swm_C4e-145822320174NAC domain-containing protein 19
3swm_B4e-145822320174NAC domain-containing protein 19
3swm_A4e-145822320174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389315.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-174NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM5XB160.0M5XB16_PRUPE; Uncharacterized protein
STRINGVIT_01s0011g02990.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56623354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-175NAC family protein